https://ogma.newcastle.edu.au/vital/access/ /manager/Index ${session.getAttribute("locale")} 5 DNA methylation profile of triple negative breast cancer-specific genes comparing lymph node positive patients to lymph node negative patients https://ogma.newcastle.edu.au/vital/access/ /manager/Repository/uon:25448 Wed 24 Nov 2021 15:53:38 AEDT ]]> Methylome sequencing in triple-negative breast cancer reveals distinct methylation clusters with prognostic value https://ogma.newcastle.edu.au/vital/access/ /manager/Repository/uon:22750 Wed 11 Apr 2018 10:56:04 AEST ]]> Prognostic and diagnostic significance of DNA methylation patterns in high grade serous ovarian cancer https://ogma.newcastle.edu.au/vital/access/ /manager/Repository/uon:21178 BRCA1, EN1, DLEC1, HOXA9, RASSF1A, GATA4, GATA5, HSULF1, CDH1, SFN) were examined and compared in a cohort of 80 primary HGSOC and 12 benign ovarian surface epithelium (OSE) samples using methylation-specific headloop suppression PCR. Results: The genes were variably methylated in primary HGSOC, with HOXA9 methylation observed in 95% of cases. Most genes were rarely methylated in benign OSE, with the exception of SFN which was methylated in all HGSOC and benign OSE samples examined. Methylation of DLEC1 was associated with disease recurrence, independent of tumor stage and suboptimal surgical debulking (HR 3.5 (95% CI:1.10–11.07), p = 0.033). A combination of the methylation status of HOXA9 and EN1 could discriminate HGSOC from benign OSE with a sensitivity of 98.8% and a specificity of 91.7%, which increased to 100% sensitivity with no loss of specificity when pre-operative CA125 levels were also incorporated. Conclusions: This study provides further evidence to support the feasibility of detecting altered DNA methylation patterns as a potential diagnostic and prognostic approach for HGSOC.]]> Sat 24 Mar 2018 07:58:05 AEDT ]]>